PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.2G135400.1.p
Common NamePRUPE_ppa014583m1g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family GATA
Protein Properties Length: 253aa    MW: 28119.9 Da    PI: 5.8436
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.2G135400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA56.73.2e-18159193135
                GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                         C++C + kTp+WR gp g+ktLCnaCG+++++ +l
  Prupe.2G135400.1.p 159 CAHCASEKTPQWRAGPMGPKTLCNACGVRFKSGRL 193
                         *******************************9885 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169922.8E-706246IPR016679Transcription factor, GATA, plant
SMARTSM004014.0E-17153203IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.451153189IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.09E-14155216No hitNo description
Gene3DG3DSA:3.30.50.103.4E-14157191IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.99E-13158205No hitNo description
PROSITE patternPS003440159184IPR000679Zinc finger, GATA-type
PfamPF003204.2E-16159193IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009416Biological Processresponse to light stimulus
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MEDVYGGGAS ASSAQQQQDY FPIDDLLDLS NDDLFSSSTS STDSIDLHPP PPPPHLHVSS  60
TVFNPTPATD FTNDLCVPSD DVAELEWLSR FVDDSFTDFP TTNVFGSASF PNDTSSLFPS  120
RVRTNRSKWD GPPEPSDSRA KPKREPSEAS PSPSKPRRCA HCASEKTPQW RAGPMGPKTL  180
CNACGVRFKS GRLVPEYRPA ASPTFVLTQH SNSHRKVLEL RRQKEASQQQ QPEEQHQPKQ  240
QFYLHRDEYQ VC*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00415DAPTransfer from AT3G60530Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007221023.10.0hypothetical protein PRUPE_ppa014583m1g, partial
SwissprotO497431e-63GATA4_ARATH; GATA transcription factor 4
TrEMBLM5X8280.0M5X828_PRUPE; Uncharacterized protein (Fragment)
STRINGPOPTR_0002s14380.16e-73(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF135501925
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60530.14e-57GATA transcription factor 4